SNP Profiles matching IMC 50

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 Key

 1234567891011121314
_Input profile
TTCCCCTTCTGGACGGAGCTGGGGAACC
1._RUQ_1056
TTCCCCGTCTGGACCGAGCTAAGGAACC
2._EET_233_[ECU]
__CCGTCT_ACCGAGCT__AA_
3._EET_233_[ECU]
__CCGTCT_ACCGAGCT__AA_
4._EET_233_[ECU]
__CCGTCT_ACCGAGCT__AA_
5._EET_233_[ECU]
__CCGTCT_ACCGAGCT__AA_
6._EET_233_[ECU]
__CCGTCT_ACCGAGCT__AA_
7._EET_233_[ECU]
__CCGTCT_ACCGAGCT__AA_
8._EET_233_[ECU]
__CCGTCT_ACCGAGCT__AA_
9._EET_233_[ECU]
__CCGTCT_ACCGAGCT__AA_
10._EET_233_[ECU]
__CCGTCT_ACCGAGCT__AA_
11._EET_233_[ECU]
__CCGTCT_ACCGAGCT__AA_
12._EET_233_[ECU]
__CCGTCT_ACCGAGCT__AA_
13._EET_233_[ECU]
__CCGTCT_ACCGAGCT__AA_
14._EET_233_[ECU]
__CCGTCT_ACCGAGCT__AA_
15._EET_233_[ECU]
__CCGTCT_ACCGAGCT__AA_
16._EET_233_[ECU]
__CCGTCT_ACCGAGCT__AA_
17._EET_233_[ECU]
__CCGTCT_ACCGAGCT__AA_
18._IMC_67
__CCGTCT_ACCGAGCT__AA_
19._IMC_67
__CCGTCT_ACCGAGCT__AA_
20._IMC_67
__CCGTCT_ACCGAGCT__AA_
21._IMC_67
__CCGTCT_ACCGAGCT__AA_
22._IMC_67
__CCGTCT_ACCGAGCT__AA_
23._IMC_67
__CCGTCT_ACCGAGCT__AA_
24._IMC_67
__CCGTCT_ACCGAGCT__AA_
25._NA_26
__CCTTCT_ACGGAGCT__AT_
26._RUQ_849
TTCCCCTTCTGGACCGAGCTGGGGATCC
27._RUQ_1055
TTCCCCTTCTGGACCGAGCTGGGGATCC
28._IMC_67
__CCGTCT_ACCGAGCT____
29._IMC_67
__CCGTCT_ACCGAGCT____
30._RUQ_828
TTCCCCTTCTGGACCCAGCTAGGGATCC
31._RUQ_1449
TTCCACTTCTGGACCGAGCTAGGGAACC
32._RUQ_1676
TTCCCCTTCTGGACGGAGCTAGGGAACC
 1516171819202122232425262728
_Input profile
AAACCCGTCGACCTCCTTGGGGTTACCC
1._RUQ_1056
AAACCCGTCGACCCCCTTGGGGTTCCCC
2._EET_233_[ECU]
AAACCCGTGGAC_CC_GG___CC
3._EET_233_[ECU]
AAACCCGTGGAC_CC_GG___CC
4._EET_233_[ECU]
AAACCCGTGGAC_CC_GG___CC
5._EET_233_[ECU]
AAACCCGTGGAC_CC_GG___CC
6._EET_233_[ECU]
AAACCCGTGGAC_CC_GG___CC
7._EET_233_[ECU]
AAACCCGTGGAC_CC_GG___CC
8._EET_233_[ECU]
AAACCCGTGGAC_CC_GG___CC
9._EET_233_[ECU]
AAACCCGTGGAC_CC_GG___CC
10._EET_233_[ECU]
AAACCCGTGGAC_CC_GG___CC
11._EET_233_[ECU]
AAACCCGTGGAC_CC_GG___CC
12._EET_233_[ECU]
AAACCCGTGGAC_CC_GG___CC
13._EET_233_[ECU]
AAACCCGTGGAC_CC_GG___CC
14._EET_233_[ECU]
AAACCCGTGGAC_CC_GG___CC
15._EET_233_[ECU]
AAACCCGTGGAC_CC_GG___CC
16._EET_233_[ECU]
AAACCCGTGGAC_CC_GG___CC
17._EET_233_[ECU]
AAACCCGTGGAC_CC_GG___CC
18._IMC_67
AAACCCGTGGAC_CC_GG___CC
19._IMC_67
AAACCCGTGGAC_CC_GG___CC
20._IMC_67
AAACCCGTGGAC_CC_GG___CC
21._IMC_67
AAACCCGTGGAC_CC_GG___CC
22._IMC_67
AAACCCGTGGAC_CC_GG___CC
23._IMC_67
AAACCCGTGGAC_CC_GG___CC
24._IMC_67
AAACCCGTGGAC_CC_GG___CC
25._NA_26
AAACCCGGGGAC_CC_GG___CC
26._RUQ_849
AAACCCGGCGACCCCCTTGGAGTTACCC
27._RUQ_1055
AAACCCGGCGACCCCCTTGGAGTTACCC
28._IMC_67
AAACCCGTGGAC_CC_GG___CC
29._IMC_67
AAACCCGTGGAC_CC_GG___CC
30._RUQ_828
AGACCCGTCGACCTCCTTGTGGTTACCC
31._RUQ_1449
AAACCCGTCGACCCCCTTGGGGTTACCC
32._RUQ_1676
AACCCTGTGGAACCCCTTGGGGTTACCC
 2930313233343536373839404142
_Input profile
CCTTAACCCCGGGGTTGTTTCCTTGGAG
1._RUQ_1056
CCTTAACCCCGGGGTTGTTTCCTTGGAG
2._EET_233_[ECU]
_CTAA_CC___GT__TTGGAG
3._EET_233_[ECU]
_CTAA_CC___GT__TTGGAG
4._EET_233_[ECU]
_CTAA_CC___GT__TTGGAG
5._EET_233_[ECU]
_CTAA_CC___GT__TTGGAG
6._EET_233_[ECU]
_CTAA_CC___GT__TTGGAG
7._EET_233_[ECU]
_CTAA_CC___GT__TTGGAG
8._EET_233_[ECU]
_CTAA_CC___GT__TTGGAG
9._EET_233_[ECU]
_CTAA_CC___GT__TTGGAG
10._EET_233_[ECU]
_CTAA_CC___GT__TTGGAG
11._EET_233_[ECU]
_CTAA_CC___GT__TTGGAG
12._EET_233_[ECU]
_CTAA_CC___GT__TTGGAG
13._EET_233_[ECU]
_CTAA_CC___GT__TTGGAG
14._EET_233_[ECU]
_CTAA_CC___GT__TTGGAG
15._EET_233_[ECU]
_CTAA_CC___GT__TTGGAG
16._EET_233_[ECU]
_CTAA_CC___GT__TTGGAG
17._EET_233_[ECU]
_CTAA_CC___GT__TTGGAG
18._IMC_67
_CTAA_CC___GT__TTGGAG
19._IMC_67
_CTAA_CC___GT__TTGGAG
20._IMC_67
_CTAA_CC___GT__TTGGAG
21._IMC_67
_CTAA_CC___GT__TTGGAG
22._IMC_67
_CTAA_CC___GT__TTGGAG
23._IMC_67
_CTAA_CC___GT__TTGGAG
24._IMC_67
_CTAA_CC___GT__TTGGAG
25._NA_26
_TTAA_CC___GT__TTCGAG
26._RUQ_849
CCTTAACCCCGGGGTTGTCTCCTTCGAG
27._RUQ_1055
CCTTAACCCCGGGGTTGTCTCCTTCGAG
28._IMC_67
_CTAA_CC___GT__TTGGAG
29._IMC_67
_CTAA_CC___GT__TTGGAG
30._RUQ_828
CCTTAACCCCGGGGTTTTCTCCTTGGAG
31._RUQ_1449
CCCCAACCCTGGGGTTGTCTCCTTGGAG
32._RUQ_1676
CCTTAACCCCGGGGTTGGTTCCTTCGAG

Input profile: IMC_50 RUQ_1590

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._IMC_67 RUQ_1056

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._EET_233_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5402 4
 Dapeng Zhang, 2016

3._EET_233_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5402 3
 Dapeng Zhang, 2016

4._EET_233_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5227 1 > FP
 Dapeng Zhang, 2016

5._EET_233_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5227 5
 Dapeng Zhang, 2016

6._EET_233_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5227 4
 Dapeng Zhang, 2016

7._EET_233_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5227 3
 Dapeng Zhang, 2016

8._EET_233_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5227 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

9._EET_233_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5336 3 > FP
 Dapeng Zhang, 2016

10._EET_233_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5336 1 > FP
 Dapeng Zhang, 2016

11._EET_233_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5336 5
 Dapeng Zhang, 2016

12._EET_233_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5336 4
 Dapeng Zhang, 2016

13._EET_233_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5132 4 > FP
 Dapeng Zhang, 2016

14._EET_233_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5132 1 > FP
 Dapeng Zhang, 2016

15._EET_233_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5132 5
 Dapeng Zhang, 2016

16._EET_233_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5132 3
 Dapeng Zhang, 2016

17._EET_233_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5132 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

18._IMC_67

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 5 > FP
 Dapeng Zhang, 2016

19._IMC_67

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 4 > FP
 Dapeng Zhang, 2016

20._IMC_67

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 2 > FP
 Dapeng Zhang, 2016

21._IMC_67

91.7 %
24 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

22._IMC_67

91.7 %
24 shared markers

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Estation Experimental Tropical Pichilingue, Ecuador
 Dapeng Zhang, 2016

23._IMC_67

91.7 %
24 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P55
 Dapeng Zhang, 2016

24._IMC_67

91.7 %
24 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1/Rep 19 C0176
 Dapeng Zhang, 2016

25._NA_26

91.7 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B E352 T5
 Dapeng Zhang, 2016

26._IMC_47 RUQ_849

91.7 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

27._IMC_57 RUQ_1055

91.7 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._IMC_67

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 3 > FP
 Dapeng Zhang, 2016

29._IMC_67

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

30._IMC_2 RUQ_828

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

31._IMC_31 RUQ_1449

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

32._LP_4_/20_[POU] RUQ_1676

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484